MmuEX6033950 @ mm10
Exon Skipping
Gene
ENSMUSG00000026931 | 1700019N19Rik
Description
RIKEN cDNA 1700019N19 gene [Source:MGI Symbol;Acc:MGI:1914757]
Coordinates
chr19:58786214-58789297:-
Coord C1 exon
chr19:58789079-58789297
Coord A exon
chr19:58787535-58787721
Coord C2 exon
chr19:58786214-58786311
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCTTGCTGTCTCCTTTACAGAAT
3' ss Score
11.31
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GCTTCATACCATGGCTCAGTTGCCAGGAAAGCTCCAGCGAGGACCGCATGAATCCCTGTGTGAAAGCGTTCCAGGAGAGAACGCAGAGATACAAGGAGGACCAGCAGGGATTAAACTGCTCTGTGGCCAACACCCCACCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGTTGCATGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG
Seq A exon
AATGCAAAAACGAGAAGAAACCGCTGCAGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCTAGGGTCACTGAATTTGGCTATGCCACAAGGTATACCATCATGGCCAAAAAGTGCTACAAGGACTTCCTGGATTTGGTGGAGCAAGCCAAGAGGGCTCAGCTGAAGCCATATGAGCA
Seq C2 exon
AACATACGATGTGAGGGCTGCCCAGCCTCTTAGCCCTTCTTCAAAAATCTTGCAGCTGCAAGGTCTCTCACCCGCATTTCCAGAATTCTCTGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026931-'12-8,'12-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.063 C2=0.206
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGTGTGAAAGCGTTCC
R:
CTGGAAATGCGGGTGAGAGAC
Band lengths:
251-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types