RnoEX0048923 @ rn6
Exon Skipping
Gene
ENSRNOG00000025953 | LOC681006
Description
hypothetical protein LOC681006 [Source:RGD Symbol;Acc:1584737]
Coordinates
chr1:279938113-279940943:-
Coord C1 exon
chr1:279940725-279940943
Coord A exon
chr1:279939394-279939580
Coord C2 exon
chr1:279938113-279938210
Length
187 bp
Sequences
Splice sites
3' ss Seq
CCCTTGCTGTCTCCTTACAGAAT
3' ss Score
12.36
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GCTTCATACCATGGCTTAGTTGCCAGGAGAGCCCCGTCGAGGACCGCATGAATTCCTGTGTGAAAGCCTTCCAGGAGAGAACGCAGAGGTACAAGGAGGAGCAGCAGACCCTAAACTGCTCTGTGGCCAACACCCGGCCCCTGAAGCCCATCTGTTCTGAGGACACGGTCCTGTGGGTGCTGCACGAGTATGCCAAGAAGTACCACCCCCTGACTCTGG
Seq A exon
AATGCAAAAACCAGAAGAAACCACTAAGGGAGCCCCCTATCCCTGGCTGGGCAGGCTACCTGCCCAGAGCCAAGGTCACTGAATTTGGCTGTGCCACAAGGTATACCCTCATGGCCAGAAAGTGCTACGAGGACTTCCTGGGTTTGGTGGAGCAGGCCAAGAGGGCTCAACTGAAGCCTTATGAGAA
Seq C2 exon
AACATACAGTGTGAGCTCCGCACAGCCTCTTCACCCTTCTCCTAAAGTCTTACAGCTGCAAGGCCTCCCACCCCCATACCCAGAACATTTTGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025953_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.016 C2=0.235
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCGCATGAATTCCTGTGT
R:
GGCCTTGCAGCTGTAAGACTT
Band lengths:
244-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]