BtaEX6102533 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37924807-37927047:+
Coord C1 exon
chr29:37924807-37924875
Coord A exon
chr29:37925833-37926183
Coord C2 exon
chr29:37926736-37927047
Length
351 bp
Sequences
Splice sites
3' ss Seq
CTGATGTCTGGCGCTTCCAGGGG
3' ss Score
8.09
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTCACCCATCTCCGACTCCATCTGACCAGCCCAGCACCACCAGTGCAGAGAGCCAGACCTTGGAGCCAG
Seq A exon
GGGAGCGACTCCAGGTCCGTCTGGTGAATGGGAGCACCCGCTGCGAAGGGACAGTGGAGGTCTGGTTCCAGCAGTCGTGGCAGCCCGTGTGCGGGGCGCTCTGGGAGCTCGATGCCTCCCACGCCCTGTGCAGCTCGCTGGACTGTGGCCGGGCTCACCCGCTGGAACTGCCGGTCCTGCAGACCCCGGAGCCGCCGGCCTGGGCAGCCGCGGGGAACGCCAGCTGGGCCCCGAACACCACAAGTGTCCTGGCCCCTGCCGTCCAGTGCAGCGGCCCCGAATGGCTGAGCTGCAAGGTGGTGGAGCGCGACTGCCGTAGCGACGAGTGGCCTGCCCAGGTCAACTGTACAG
Seq C2 exon
ATAAACGCGATTTGAAATTGGTGGGTGGTGGCAGCCCATGTGAGGGCCGCGTGGAGATGCTGGAGCACGGCCAGTGGGGTTCGGTGTGTGACGACACATGGGACCTGGAGGATGCTCACGTGGTGTGCCGGCAGCTGGGCTGCGGCTGGGCCGTCCAGGCCCTGCCCGGCTTGCACTTTGCCCCTGGCCAAGGACGCATCCACTGGGACCAAGTGAACTGCACCGGGTTGGAGACCTACCTGTGGCACTGCCCGGGGCTGCCCGGAAATGGGTACTGTGGCCACAAGGAGGATGCCGGAGTGGTGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.153 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.4)
C2:
PF0053013=SRCR=WD(100=92.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCCATCTCCGACTCCATC
R:
GTGGCCACAGTACCCATTTCC
Band lengths:
352-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]