MmuEX6031552 @ mm9
Exon Skipping
Gene
ENSMUSG00000024670 | Cd6
Description
CD6 antigen [Source:MGI Symbol;Acc:MGI:103566]
Coordinates
chr19:10872806-10874902:-
Coord C1 exon
chr19:10874834-10874902
Coord A exon
chr19:10873684-10874031
Coord C2 exon
chr19:10872806-10873117
Length
348 bp
Sequences
Splice sites
3' ss Seq
CTCGCTCTTGACCCTTCCAGAGG
3' ss Score
7.13
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GTCTCCCATCTCCAGCCCCCTCTGGCCAGCACAAAAATGGCACCATCCCGAACATGACCTTGGACCTAG
Seq A exon
AGGAGCGGCTGGGGATTCGCCTGGTGAACGGGAGCAGTCGCTGCAGCGGATCTGTGAAGGTTCTACTGGAGTCCTGGGAGCCTGTGTGTGCGGCACACTGGAACAGGGCTGCTACGGAGGCTGTGTGCAAAGCGCTGAACTGTGGTGATTCGGGAAAGGTTACCTACCTGATGCCACCCACCTCTGAGCTTCCACCAGGAGCCACTTCTGGGAACACAAGCAGCGCCGGGAATACGACGTGGGCGCGGGCACCAACTGAGAGATGCAGGGGAGCCAATTGGCAGTTCTGCAAGGTGCAGGACCAGGAGTGTAGCAGCGACAGGCGGCTGGTGTGGGTCACCTGTGCAG
Seq C2 exon
AGAACCAAGCAGTGCGGTTAGTGGATGGTAGCAGCCGCTGTGCTGGCCGAGTGGAGATGCTGGAGCATGGTGAATGGGGTACCGTGTGCGACGACACGTGGGACCTGCAGGATGCACACGTAGTGTGTAAGCAACTGAAGTGCGGCTGGGCAGTGAAGGCGCTGGCCGGCTTGCACTTCACCCCAGGCCAAGGACCCATCCACCGCGATCAGGTGAACTGCTCTGGGACTGAGGCTTACCTGTGGGACTGCCCGGGACGGCCAGGAGACCAGTACTGTGGTCACAAGGAGGACGCAGGAGTGGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024670-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=92.3)
C2:
PF0053013=SRCR=WD(100=92.4),PF054546=DAG1=PU(11.8=8.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTGGCCAGCACAAAAAT
R:
CGTCCTCCTTGTGACCACAGT
Band lengths:
346-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: