BtaEX6102682 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40502276-40505451:-
Coord C1 exon
chr29:40505316-40505451
Coord A exon
chr29:40502488-40502582
Coord C2 exon
chr29:40502276-40502365
Length
95 bp
Sequences
Splice sites
3' ss Seq
TACTCTCTCCTCTCTTGCAGACG
3' ss Score
11.61
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
GCCGGGGGGACCCGCCGCCGCCGGTCATGTGGGCCGGACTGCTCCTCCGGGCCGCCTGCGTCGCGCTCCTGCTGCCGGGCACCCCGGCCCGCGGCTACACCGGGAGGAAGACGCCGGGGCACTTTGGGGCTGAGAG
Seq A exon
ACGCCGGCTGGGCCCCCACGTCTGCCTCTCGGGATTCGGGAGCGGCTGCTGCCCTGGCTGGGCGCCCTCCATGGGCAGTGGGCACTGCACCCTTC
Seq C2 exon
CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGACGGAGAGCAAGGGCCCACCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGTGGGCCGGACTG
R:
GGCAGGAACAGACATTGGGAG
Band lengths:
173-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]