MmuEX6031536 @ mm10
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10634233-10637406:+
Coord C1 exon
chr19:10634233-10634583
Coord A exon
chr19:10637144-10637238
Coord C2 exon
chr19:10637317-10637406
Length
95 bp
Sequences
Splice sites
3' ss Seq
AGTGCTCTCTTTTCTTGCAGACG
3' ss Score
10.98
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GCCTCCCGGAGAGGCACCGGCGGGCGGCGCTCCTTTTGTGTGTTTCTTTCCAAGGTGCAAGGACCCCCACCCCCACCCGCCTAGGCAGTCCTCCCCTAACCACCAGCCCTCTTCTCGTCGTCCTCAGTCCCTGCCAGCTGTGGGGGAACCAGATCGCTTCCAGGAGGAGGGACAAGGTCGGTAGCCCCCTCCCCGGTGCGGGACCTGAGCCCAGTAGAGTCCAGGACCTCTGCTGCCAGTCATGTGGGCTAGACTGTTGCTCCATGTCGCCTACATCTTGATCCCGTTGCTGGGGTCTTCAGCCCGAGGCTATACCGGGAGGAAGGCGCCAGGGCACTACTCTGCGGAGAG
Seq A exon
ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC
Seq C2 exon
CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'1-4,'1-0,2-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTAGACTGTTGCTCCAT
R:
GGCAGGAACAGACATTGGGAG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types