MmuEX6031536 @ mm9
Exon Skipping
Gene
ENSMUSG00000043789 | Vwce
Description
von Willebrand factor C and EGF domains [Source:MGI Symbol;Acc:MGI:1919018]
Coordinates
chr19:10708723-10711896:+
Coord C1 exon
chr19:10708723-10709073
Coord A exon
chr19:10711634-10711728
Coord C2 exon
chr19:10711807-10711896
Length
95 bp
Sequences
Splice sites
3' ss Seq
AGTGCTCTCTTTTCTTGCAGACG
3' ss Score
10.98
5' ss Seq
TGCGTAAGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
GCCTCCCGGAGAGGCACCGGCGGGCGGCGCTCCTTTTGTGTGTTTCTTTCCAAGGTGCAAGGACCCCCACCCCCACCCGCCTAGGCAGTCCTCCCCTAACCACCAGCCCTCTTCTCGTCGTCCTCAGTCCCTGCCAGCTGTGGGGGAACCAGATCGCTTCCAGGAGGAGGGACAAGGTCGGTAGCCCCCTCCCCGGTGCGGGACCTGAGCCCAGTAGAGTCCAGGACCTCTGCTGCCAGTCATGTGGGCTAGACTGTTGCTCCATGTCGCCTACATCTTGATCCCGTTGCTGGGGTCTTCAGCCCGAGGCTATACCGGGAGGAAGGCGCCAGGGCACTACTCTGCGGAGAG
Seq A exon
ACGTCGTCTGGGGCCCCACGTCTGCCTCTCTGGCTTTGGGAGTGGCTGCTGCCCTGGCTGGGCCCCTTCCATGGGCAGCGGGCACTGTACCCTGC
Seq C2 exon
CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043789-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTAGACTGTTGCTCCAT
R:
GGCAGGAACAGACATTGGGAG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: