BtaEX6103423 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44396444-44397411:-
Coord C1 exon
chr29:44397082-44397411
Coord A exon
chr29:44396722-44396924
Coord C2 exon
chr29:44396444-44396549
Length
203 bp
Sequences
Splice sites
3' ss Seq
CGCCGTGCCCCGCCCCCCAGTGC
3' ss Score
8.13
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
TGGTGTGCCCCCTGCCCTGTATGAACGGCGGCCAGTGCTCCTCGCGAAACCAGTGCCTGTGTCCCCCGGACTTCACGGGTCGCTTCTGCCAGGTGCCGGCTGGAGGAGCTGGCGGAGGCGCTGGCGGCTCAGGCCCTGGGCTTGGCCGGGCCGGGGCCCTGTCCACGGGCGCGCTGCCGCCCCTGGCTCCAGAAGGCGAGTCTGTGGCCAGCAAGCACGCCATGTACGCGGTCCAGGTGATCGCCGATCCACCAGGGCCCGGGGAGGGGCCTCCTGCCCAGCATGCGACGTTCCTGGTGCCCCTCGGGCCAGGACAGATCTCAGCGGAAG
Seq A exon
TGCAGGCCCCGCCCCCCGTGGTGAACGTGCGCGTCCACCACCCGGCCGAGGCCTCAGTCCAAGTGCACCGCATTGAAGGGCCCAACGCCGAGGGCCCGGCCCCCTCCCAGCACCTGCTGCCGCACCCCAAGCCCGCGCATCCCCGGCCACCCACCCAGAAGCCCCTGGGCCGTTGCTTCCAGGACACGCTGCCCAAGCAACCA
Seq C2 exon
TGTGGCAGCAACCCCCTCCCGGGCCTCACCAAGCAGGAAGACTGCTGCGGGAGCATCGGCACCGCTTGGGGCCAGAGCAAGTGCCACAAGTGCCCCCAGCTGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747-'3-4,'3-1,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=0.882 C2=0.111
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=24.3)
A:
PF0068312=TB=PU(2.3=1.5)
C2:
PF0068312=TB=FE(81.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCACGGGTCGCTTCTG
R:
CAGTCTTCCTGCTTGGTGAGG
Band lengths:
306-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]