DreEX6012181 @ danRer10
Exon Skipping
Gene
ENSDARG00000035682 | ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060526-130]
Coordinates
chr5:36952708-36955302:+
Coord C1 exon
chr5:36952708-36952825
Coord A exon
chr5:36954941-36955107
Coord C2 exon
chr5:36955197-36955302
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTTCTTATTCAAATTTCCAGTGC
3' ss Score
6.61
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTGGTGCCAGGTGAGTCTCAGAGTCTGTCTGAGTCTATCGGTGCAGGTGGACGACAGCAGATGACACAAACACACTCTGTGTTCACTCTGCAAGGCACTGGACATCACTCTTCTGAAG
Seq A exon
TGCAGTTCAATGTTCGTGTTGTTCACACGCCAGACACATCAGTTGTCATTCATCCTCTGGACCAATCAGAGAACAAGCCTCACAGTACCAAAACTGTGGCCCGCCTCCCTCCAACGACTCATAAACCCAAGGGGAGGTGCTTCCAGGAGACCACGCCCAAACAGGCT
Seq C2 exon
TGTAGTAGTAATCCCCTTCCTGGTCTGACAAATCAAGAAGACTGCTGTGGCAGTGTGGGTAATTCCTGGGGCCAAAATAAATGCTACAAATGCCCTTTACTACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035682-'4-6,'4-4,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=0.679 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
PF0068312=TB=PU(2.3=1.8)
C2:
PF0068312=TB=FE(79.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGTGAGTCTCAGAGTCT
R:
TGGTAGTAAAGGGCATTTGTAGCA
Band lengths:
218-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]