MmuEX6030827 @ mm10
Exon Skipping
Gene
ENSMUSG00000024940 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:MGI Symbol;Acc:MGI:1101355]
Coordinates
chr19:5745440-5746404:+
Coord C1 exon
chr19:5745440-5745769
Coord A exon
chr19:5745918-5746120
Coord C2 exon
chr19:5746299-5746404
Length
203 bp
Sequences
Splice sites
3' ss Seq
CACCGCGCCCCGCCCCCCAGTGC
3' ss Score
7.08
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
TGGTGTGCCCTCTACCCTGCATGAACGGTGGCCAGTGCTCTTCCCGAAACCAGTGCCTGTGTCCCCCGGATTTCACGGGGCGCTTCTGCCAGGTGCCTGCTGCAGGAACCGGAGCTGGCACCGGGAGTTCAGGCCCCGGCCTGGCCCGGACCGGGGCCATGTCCACAGGCCCGCTGCCGCCCCTTGCCCCAGAAGGAGAGTCTGTGGCTAGCAAACACGCCATTTACGCGGTGCAGGTGATCGCAGATCCTCCCGGGCCGGGGGAGGGTCCTCCTGCACAACATGCAGCCTTCTTGGTGCCCCTGGGGCCAGGACAAATCTCGGCAGAAG
Seq A exon
TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT
Seq C2 exon
TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024940-'4-7,'4-3,8-7=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=0.882 C2=0.111
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=24.3)
A:
PF0068312=TB=PU(2.3=1.5)
C2:
PF0068312=TB=FE(81.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTCCCCCGGATTTCAC
R:
GTAAGGCCAGGCAAAGGGTTG
Band lengths:
303-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types