BtaEX6103427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006747 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr29:44394984-44396026:-
Coord C1 exon
chr29:44395904-44396026
Coord A exon
chr29:44395260-44395418
Coord C2 exon
chr29:44394984-44395169
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCCATCACTGGCCCCTGCAGCGG
3' ss Score
6.91
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACATCAATGAGTGCGCGATGCCAGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGTTCCTATCGCTGTGTCTGCCCACCTGGCCATAGCTTGGGCCCCTCCCGCACACAGTGCATTG
Seq A exon
CGGACAAGCCGGAGGAGAAGAGCCTGTGTTTCCGCCTGGTGAGCCCTGAACACCAGTGCCAGCACCCCCTGACCACACGCCTCACCCGCCAACTCTGCTGCTGCAGTGTCGGCAAGGCCTGGGGTGCCAGGTGCCAGCGCTGCCCAGCTGATGGCACTG
Seq C2 exon
CTGCCTTCAAGGAGATCTGCCCAGCTGGGAAGGGGTACCACATCCTCACCTCCCACCAGACGCTCACCATTCAGGGCGAAAGTGACTTTTCCCTTTTCCTGCACCCCGATGGGCCACCCAAGCCCCAGCAGCTGCCCGAGAGCCCCAGCCGGGCACCACCACCTGAGGACACAGAGGAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006747-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.619
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(85.7=66.7)
C2:
PF0068312=TB=PD(11.9=7.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTATCGCTGTGTCTGCC
R:
TTCCTCTGTGTCCTCAGGTGG
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]