RnoEX6006172 @ rn6
Exon Skipping
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221104707-221105643:+
Coord C1 exon
chr1:221104707-221104829
Coord A exon
chr1:221105203-221105361
Coord C2 exon
chr1:221105458-221105643
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTCCCACCCCTGCAGCCG
3' ss Score
9.18
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
ACATCAACGAATGTGTGATGCCCGGCATGTGTCGCCATGGTGACTGTCTCAACAACCCTGGCTCTTACCGCTGTGTCTGCCCGCCTGGTCATAGCCTGGGTCCCTCGCGCACACAGTGCATTG
Seq A exon
CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTCGTGAGCACTGAGCATCAGTGCCAGCACCCACTGACCACACGCCTCACACGCCAGCTCTGCTGCTGCAGTGTGGGTAAAGCCTGGGGCGCCCGGTGCCAGCGCTGCCCAGCAGATGGTACAG
Seq C2 exon
CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACCCTCACCATCCAGGGTGAAAGTGATTTCTCCCTCTTCCTGCACCCTGATGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCAGCACTCGAGGACACAGAGGAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.619
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(85.7=66.7)
C2:
PF0068312=TB=PD(11.9=7.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAACCCTGGCTCTTACCG
R:
TTCCTCTGTGTCCTCGAGTGC
Band lengths:
253-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]