HsaEX6002948 @ hg19
Exon Skipping
Gene
ENSG00000168056 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:6716]
Coordinates
chr11:65319443-65320453:-
Coord C1 exon
chr11:65320331-65320453
Coord A exon
chr11:65319719-65319877
Coord C2 exon
chr11:65319443-65319628
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCCCCCACTGGCCCCTGCAGCAG
3' ss Score
6.47
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
ACATCAACGAGTGCGCAATGCCGGGCGTGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCCTATCGCTGTGTCTGCCCACCTGGCCATAGTTTAGGCCCCTCCCGTACACAGTGCATTG
Seq A exon
CAGACAAACCGGAGGAGAAGAGCCTGTGTTTCCGCCTGGTGAGCCCTGAGCACCAGTGCCAGCACCCACTGACCACCCGCCTGACCCGCCAGCTCTGCTGCTGCAGTGTCGGCAAGGCCTGGGGCGCGCGGTGTCAGCGCTGCCCAACAGATGGCACCG
Seq C2 exon
CTGCGTTCAAGGAGATCTGCCCAGCTGGGAAGGGATACCACATTCTCACCTCCCACCAGACGCTCACCATTCAGGGCGAGAGTGACTTTTCCCTTTTCCTGCACCCTGACGGGCCACCCAAGCCCCAGCAGCTTCCGGAGAGCCCTAGCCAGGCTCCACCACCTGAGGACACAGAGGAAGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168056-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.619
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(85.7=66.7)
C2:
PF0068312=TB=PD(11.9=7.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAACCCTGGCTCCTATCG
R:
TTCCTCTGTGTCCTCAGGTGG
Band lengths:
253-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)