BtaEX6104542 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X750]
Coordinates
chr29:51437535-51438317:-
Coord C1 exon
chr29:51438139-51438317
Coord A exon
chr29:51437741-51437828
Coord C2 exon
chr29:51437535-51437617
Length
88 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTGCCCTCCACACAGCCT
3' ss Score
8.13
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
Exon sequences
Seq C1 exon
GCCCTTCGAGCTGTGCCATGTGCTGATCCCTCCCTGGCCGTACTACCAAGGCTGCACGTTTGACCAGTGCCACATGCCCGGCACGGACATGGTGTGCACTGCCCTGGAGCTCTATGCCGCCCTCTGTGCGTCCCTCGGCGTCTGCGTCGACTGGCGGGGCCATACCAACTCCACGTGCC
Seq A exon
CCTTCACCTGCCCTGTGGGCATGGAGTACTGGCCCTGCGGCCCGCCCATCCCCTCCTACTGCTACACGAACAACAGCGCCAGCTCCCT
Seq C2 exon
TCCCATCACGGAAGGCTGCTTCTGCCCGCGGGGCACAATGCTGTACAGCTCGAGCAAGGAGGTCTGCGTGCCCGACTGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038262-'10-9,'10-7,11-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
PF087426=C8=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGCCGTACTACCAAG
R:
CAGAAGCAGCCTTCCGTGATG
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]