MmuEX6015367 @ mm9
Exon Skipping
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:148999613-149000675:+
Coord C1 exon
chr7:148999613-148999791
Coord A exon
chr7:149000359-149000449
Coord C2 exon
chr7:149000575-149000675
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGACTCTCTCTCCACGCAGCAT
3' ss Score
9.29
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
TACCTTCAAGCTCTGCCATGACGTCATCCCCCCGCTGCAGTTCTATCAAGGCTGCTTATTTGACTACTGCCACATGCTGGACCTGGAGGTTGTATGCTCAGGCCTAGAGCTCTATGCATCACTCTGTGCAGCCCAAGGCGTGTGCATTCCCTGGAGAAGCCAAACCAACAACACCTGCT
Seq A exon
CATTCACGTGCCCTGATAACCAAGTATACCAGCCTTGTGGCCCATCCAACCCTCACTACTGCTACAGGGATGATAGCATCAGCCCAAGCCT
Seq C2 exon
GACCCTTCAAGAGGCTGGTCCCAAGACAGAGGGCTGCTTCTGTCCAGACAGCACGACACTTTTCAGTACCAATGACTCAATCTGCGTGCCTTCCTGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-'44-45,'44-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(42.9=87.1)
C2:
PF0009313=VWC=PU(23.5=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCTGCAGTTCTATCAAGG
R:
TCTTGGGACCAGCCTCTTGAA
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: