DreEX0048055 @ danRer10
Exon Skipping
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8311245-8314817:+
Coord C1 exon
chr25:8311245-8311429
Coord A exon
chr25:8311792-8311861
Coord C2 exon
chr25:8314687-8314817
Length
70 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGGTTTCTCTAACAGCAC
3' ss Score
9.09
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CATGTTTAAGGAGTGCCATGATCATATTCCTTACGAAAGTTATTATGAGTCATGCAAATTTGATGTGTGCCGCATGGGAAATCGTTCAATTGGTTGCACCAGTCTTGAGGCGTATGCTGCATTATGTGGAAAAGAAGGCATCTGTGTGGATTGGAGAACCTCCGATGACCTTAAACAAACCTGTG
Seq A exon
CACACAAATGCCCCAGTCACAAAGTATACAATGCATGTGGACCTAAAGTGGAAAAAACCTGCAGTACCAG
Seq C2 exon
GTACAACGACTTGTTTGTGGAGAAAGACTGTCAAGGCGAAAGCTGTCATCAAACATACATGGAAGGTTGTTTCTGTCCCGATAACACGTATCTAGTTAGTTCAACGACAGATTACTGTACGGCTTACTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331-'43-46,'43-45,44-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(83.8=100)
A:
PF087426=C8=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATTTGATGTGTGCCGCA
R:
CAGCTTTCGCCTTGACAGTCT
Band lengths:
177-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]