RnoEX6005667 @ rn6
Exon Skipping
Gene
ENSRNOG00000058420 | AABR07006033.1
Description
NA
Coordinates
chr1:214751207-214752212:+
Coord C1 exon
chr1:214751207-214751385
Coord A exon
chr1:214751897-214751987
Coord C2 exon
chr1:214752112-214752212
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGACTCTCTCTCCATGCAGCAT
3' ss Score
10.3
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
CGTCTTCAAGCTCTGCCATGACATCATCCCCCCGCTGCAGTTCTATGAAGGCTGCTTATTTGACTACTGCCACATGTTGGACTTGGAGGTGGTGTGCTCAGGCCTGGAGCTCTATGCATCACTATGTGCAGCCCAAGGCGTGTGCATCCCCTGGAGAAGCCATACCAACAACACCTGTC
Seq A exon
CATTCACGTGCCCTGAAAACCAAGTATACCAGCCTTGTGGTCCTTCCAACCCTCACTACTGCTACAGGAATGATGATATCAGCCTAAGCTT
Seq C2 exon
GGCCATTCAAAAGGCTGGTCCTAAGTCAGAGGGCTGCTTCTGTCCAGATGACATGACACTTTTCAGTTCTAACGACTCAATCTGCGTGCCTTCCTGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058420-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
PF087426=C8=PD(0.1=0.0)
C2:
PF0009313=VWC=PU(23.5=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGAGCTCTATGCATCAC
R:
GGCACGCAGATTGAGTCGTTA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]