GgaEX7005237 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr5:14143070-14147093:-
Coord C1 exon
chr5:14147002-14147093
Coord A exon
chr5:14146036-14146105
Coord C2 exon
chr5:14143070-14143092
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCCATCTTTTGTCATACAGCAT
3' ss Score
7.39
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTAAAACATGGAATTCCAAAAAAAAAACCAAACCAAACCAAACAAACAAACAAACAAAAAAACCAAAACAAACAGACAAACAAACAAACAAA
Seq A exon
CATACAATTGTCCAGCAAACATGGTATACAAGCCGTGCGGGTCCATTAATCCTGCTACCTGCAGCCAAAG
Seq C2 exon
ACGGCACTACACACGTGCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740-'37-39,'37-37,39-39=AN
Average complexity
A_C3
Mappability confidence:
90%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=0.208 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAACCAAACCAAACAAACA
R:
TTAAGCACGTGTGTAGTGCCG
Band lengths:
88-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]