MmuEX6015367 @ mm10
Exon Skipping
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:141813708-141814770:+
Coord C1 exon
chr7:141813708-141813886
Coord A exon
chr7:141814454-141814544
Coord C2 exon
chr7:141814670-141814770
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTGACTCTCTCTCCACGCAGCAT
3' ss Score
9.29
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
TACCTTCAAGCTCTGCCATGACGTCATCCCCCCGCTGCAGTTCTATCAAGGCTGCTTATTTGACTACTGCCACATGCTGGACCTGGAGGTTGTATGCTCAGGCCTAGAGCTCTATGCATCACTCTGTGCAGCCCAAGGCGTGTGCATTCCCTGGAGAAGCCAAACCAACAACACCTGCT
Seq A exon
CATTCACGTGCCCTGATAACCAAGTATACCAGCCTTGTGGCCCATCCAACCCTCACTACTGCTACAGGGATGATAGCATCAGCCCAAGCCT
Seq C2 exon
GACCCTTCAAGAGGCTGGTCCCAAGACAGAGGGCTGCTTCTGTCCAGACAGCACGACACTTTTCAGTACCAATGACTCAATCTGCGTGCCTTCCTGCCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-'43-45,'43-43,44-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.007
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
PF087426=C8=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCTGCAGTTCTATCAAGG
R:
TCTTGGGACCAGCCTCTTGAA
Band lengths:
175-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types