HsaEX7005748 @ hg38
Exon Skipping
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1195876-1196720:+
Coord C1 exon
chr11:1195876-1196054
Coord A exon
chr11:1196388-1196475
Coord C2 exon
chr11:1196617-1196720
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTGGCTTCCCCTCCCCACAGCAT
3' ss Score
10.14
5' ss Seq
CGGGTAGGC
5' ss Score
7.5
Exon sequences
Seq C1 exon
GGTCTTTGAGCCGTGCCACACTGTGATCCCCCCACTGCTGTTCTATGAGGGCTGCGTCTTTGACCGGTGCCACATGACGGACCTGGATGTGGTGTGCTCCAGCCTGGAGCTGTACGCGGCACTCTGTGCGTCCCACGACATCTGCATCGATTGGAGAGGCCGGACCGGCCACATGTGCC
Seq A exon
CATTCACCTGCCCAGCCGACAAGGTGTACCAGCCCTGCGGCCCGAGCAACCCCTCCTACTGCTACGGGAATGACAGCGCCAGCCTCGG
Seq C2 exon
GGCTCTGCCGGAGGCCGGCCCCATCACCGAAGGCTGCTTCTGTCCGGAGGGCATGACCCTCTTCAGCACCAGTGCCCAAGTCTGCGTGCCCACGGGCTGCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182-'39-48,'39-47,40-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(82.2=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(43.3=86.7)
C2:
PF0182612=TIL=PD(55.0=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGACGGACCTGGATGTG
R:
ACTGGTGCTGAAGAGGGTCAT
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains