GgaEX1001577 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NZY2]
Coordinates
chr5:14252173-14253199:-
Coord C1 exon
chr5:14253021-14253199
Coord A exon
chr5:14252442-14252511
Coord C2 exon
chr5:14252173-14252294
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTGATGCTCTACAGAGG
3' ss Score
6.7
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACCTGACTGAGTGCCACCGTGTGGTCCCCCCGCAGCCCTACTATGAGGCATGCGTAGCCAGCAGATGCTCGCAGCAGCACCCCAGCACTGAGTGCCAGAGCATGCAGACATACGCAGCCTTGTGTGGGCTCCACGGGATCTGTGTGGACTGGAGGGGGCAGACGAATGGGCAGTGCG
Seq A exon
AGGCCACCTGTGCTCGGGATCAGGTCTACAAGCCATGTGGGGAAGCAAAAAGAAACACTTGCTTCAGCAG
Seq C2 exon
AGAAGTCATTGTGGACACCCTCCTCTCCCGAAACAACACACCAGTGTTTGTTGAGGGATGTTACTGCCCTGATGGGAATATTCTGCTGAATGAGCATGATGGCATCTGTGTTTCTGTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717-'41-46,'41-45,42-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(83.3=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(31.7=83.3)
C2:
PF0182612=TIL=FE(65.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATACGCAGCCTTGTGTG
R:
ACACAGATGCCATCATGCTCA
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]