GgaEX1001577 @ galGal3
Exon Skipping
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15965659-15966685:-
Coord C1 exon
chr5:15966507-15966685
Coord A exon
chr5:15965928-15965997
Coord C2 exon
chr5:15965659-15965780
Length
70 bp
Sequences
Splice sites
3' ss Seq
TGTGTTGTGATGCTCTACAGAGG
3' ss Score
6.7
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACCTGACTGAGTGCCACCGTGTGGTCCCCCCGCAGCCCTACTATGAGGCATGCGTAGCCAGCAGATGCTCGCAGCAGCACCCCAGCACTGAGTGCCAGAGCATGCAGACATACGCAGCCTTGTGTGGGCTCCACGGGATCTGTGTGGACTGGAGGGGGCAGACGAATGGGCAGTGCG
Seq A exon
AGGCCACCTGTGCTCGGGATCAGGTCTACAAGCCATGTGGGGAAGCAAAAAGAAACACTTGCTTCAGCAG
Seq C2 exon
AGAAGTCATTGTGGACACCCTCCTCTCCCGAAACAACACACCAGTGTTTGTTGAGGGATGTTACTGCCCTGATGGGAATATTCTGCTGAATGAGCATGATGGCATCTGTGTTTCTGTCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(83.3=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(31.7=83.3)
C2:
PF0182612=TIL=FE(65.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATACGCAGCCTTGTGTG
R:
ACACAGATGCCATCATGCTCA
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]