RnoEX6005616 @ rn6

Exon Skipping

Gene

ENSRNOG00000046602 | AABR07006030.1

Description

NA

Coordinates

chr1:214687708-214687867:+

Coord C1 exon

chr1:214687708-214687727

Coord A exon

chr1:214687733-214687778

Coord C2 exon

chr1:214687828-214687867

Length

46 bp

Sequences

Splice sites

3' ss Seq

ACGTGTCCAGCTCACAGCGGCAG

3' ss Score

-11.17

5' ss Seq

CAGGTATGC

5' ss Score

9.37

Exon sequences

Seq C1 exon

CTGTGACGTGTCCAGCTCAC

Seq A exon

CAGTATCAGGGCCTGTGGCCTCAGAGGAAATCCACCTGCAGTCCAG

Seq C2 exon

ATCCCAGCCAGCCTTTAGCATCCTTTTCAGAGCTGTGCCG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000046602-'57-59,'57-58,58-59=AN

Average complexity

A_C3

Mappability confidence:

75%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

  C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF087426=C8=PD(0.1=0.0)

A:

NO

C2:

NO

Main Inclusion Isoform:

ENSRNOP00000064975

Main Skipping Isoform:

NA

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

NA

Associated events

Conservation

Human

(hg38)

No conservation detected

Human

(hg19)

chr11:1099211-1099280

HIGH PSI

HsaEX6000271

(MUC2)

Mouse

(mm10)

No conservation detected

Mouse

(mm9)

chr7:148935209-148935278

HIGH PSI

MmuEX6015330

(Muc2)

Cow

(bosTau6)

chrUn_GJ059601:2392-2461

Chicken

(galGal4)

chr5:14301935-14302004

HIGH PSI

GgaEX6037310

([1])

Chicken

(galGal3)

chr5:16015421-16015490

HIGH PSI

GgaEX6037310

([2])

Zebrafish

(danRer10)

chr25:8311792-8311861

ALTERNATIVE

DreEX0048055

(muc5.1)

Zebrafish

(danRer10)

chr25:8169788-8169855

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

CTGTGACGTGTCCAGCTCAC

R:

CGGCACAGCTCTGAAAAGGAT

Band lengths:

60-106

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]