HsaEX6000271 @ hg19
Exon Skipping
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1098641-1099519:+
Coord C1 exon
chr11:1098641-1098819
Coord A exon
chr11:1099211-1099280
Coord C2 exon
chr11:1099419-1099519
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCCCATGTCCCTCAGTGG
3' ss Score
6.75
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CCTGTTTGCCCAGTGCCACGCACTGGTGCCCCCGCAGCACTACTACGATGCCTGCGTGTTCGACAGCTGCTTCATGCCGGGCTCGAGCCTGGAGTGCGCCAGTCTGCAGGCCTACGCAGCCCTCTGTGCCCAGCAGAACATCTGCCTCGACTGGCGGAACCACACGCATGGGGCCTGCT
Seq A exon
TGGTGGAGTGCCCATCTCACAGGGAGTACCAGGCCTGTGGCCCTGCAGAAGAGCCCACGTGCAAATCCAG
Seq C2 exon
CTCCTCCCAGCAGAACAACACAGTCCTGGTGGAAGGCTGCTTCTGTCCTGAGGGCACCATGAACTACGCTCCTGGCTTTGATGTCTGCGTGAAGACCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-'42-41,'42-40,43-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(80.8=96.7)
A:
PF0182612=TIL=PU(35.7=83.3)
C2:
PF0182612=TIL=FE(60.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCACTACTACGATGCCTG
R:
GTGTTGTTCTGCTGGGAGGAG
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)