MmuEX6015330 @ mm9
Exon Skipping
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:148934835-148935507:+
Coord C1 exon
chr7:148934835-148935013
Coord A exon
chr7:148935209-148935278
Coord C2 exon
chr7:148935410-148935507
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTCCCTCCCCCACAGCTG
3' ss Score
11.37
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
CCTATTCTCCCAGTGCCACGCCTTCGTGCCTCCCAAGCACTACTATGAAGCTTGCCTGTTTGATAGCTGCTATGTGCCTGGCTCTAATATGGAGTGTGCCAGTGTACAGGCCTATGCCACCCTCTGTGCCAAGGAAGGTGTCTGCATTGACTGGCGGAACCACACCCAGGGAGTCTGCT
Seq A exon
CTGTGAAGTGCCCACCTCACAAGCAGTATCAGGCCTGTGGCCCTGAAGAAGAACCCACCTGCCAGCCCAG
Seq C2 exon
CTCCTCTCAGAATTCCACACTCTTGGTGGAAGGCTGCTTCTGTCCTGAAGGCACCACAAAGTTTGCCCCTGGCTATGACGTCTGTGTGAAGACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(36.4=83.3)
C2:
PF0182612=TIL=FE(60.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGCTGCTATGTGCCTGGC
R:
GTGGTGCCTTCAGGACAGAAG
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: