DreEX6101034 @ danRer10
Exon Skipping
Gene
ENSDARG00000078994 | muc2.2
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8265496-8266267:+
Coord C1 exon
chr25:8265496-8265662
Coord A exon
chr25:8265759-8265828
Coord C2 exon
chr25:8266164-8266267
Length
70 bp
Sequences
Splice sites
3' ss Seq
AAGATACATTTCTTCCTCAGATA
3' ss Score
6.59
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
GTTTGAAGCGTGCCACTCCCATGTGCCTCCTGAAAACTTCTTTTCAGCCTGTCAATATGACAGCAGTAATAACCCTGCTGAAGTGTGTGCCAGTCTGCAGAGCTACGCAAGCGTCTGTGCAATGTTTGGGGTCTGCATATACTGGAGGAACTACACAAGCCAATGCA
Seq A exon
ATATTGGTTGTTCAGAAGATAAAGTGTTCTTGCCTTGTGGTTCATTTGAACCGCCAACATGTAGAGATAG
Seq C2 exon
ACAAATGGAGAGCAACATTACAGTGTCCACAGAAGGCTGCTTCTGTAGTCAGAACACAACACTCTTCACCAAGGATTCTGGAGTCTGTGTGCCACAACCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994-'23-27,'23-25,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.2=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(35.1=83.3)
C2:
PF0182612=TIL=FE(59.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGTGTGCCAGTCTGCAG
R:
GGCACACAGACTCCAGAATCC
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]