GgaEX6037310 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr5:14301520-14304239:-
Coord C1 exon
chr5:14304061-14304239
Coord A exon
chr5:14301935-14302004
Coord C2 exon
chr5:14301520-14301620
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTCTCCCATTCCAGCTT
3' ss Score
9.3
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGTGTTTGAGAAGTGCCGTGAAGTTGTTAAGCCTGATAAGTACTATGCAGCTTGCGTTTTTGATAGTTGTACACTTCCCGACTTAGACCTGGAATGCTCAAGTCTGCAGATCTATGCAGCTATCTGTGCCGATCAAAATGTCTGCGTTGACTGGAGAAGTCATACCAATGGTGTTTGCT
Seq A exon
CTTATGAATGTCCCAAACATAAAGAATATAGAGCATGTGGTCCTATTCAAGAGACAACCTGCAAGTCAAG
Seq C2 exon
TCCACAAAATGAAACTTCAATTAAACAAATTGAAGGCTGTTTCTGTCCTAATGGTACAATGCTGTTCGACTCTGGTGTGGATGTCTGTGTAAATACCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744-'53-59,'53-58,54-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(35.7=83.3)
C2:
PF0182612=TIL=FE(60.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAATGCTCAAGTCTGC
R:
CACACCAGAGTCGAACAGCAT
Band lengths:
172-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]