BtaEX6105368 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000033398 | HKDC1
Description
hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
Coordinates
chr28:25778975-25782409:+
Coord C1 exon
chr28:25778975-25779120
Coord A exon
chr28:25779220-25779339
Coord C2 exon
chr28:25782314-25782409
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTCTCTCCCTGCAGCTG
3' ss Score
14.22
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AGAAAGGAAAGTTCCTCGCCCTGGATCTGGGGGGAACCAACTTCCGGGTCCTCCTGGTAAAAATCAGAAGTGGACGACGGTCAGTGCGGATGTACAACAAGATCTTCGCCATCCCCCTGGAGATCATGCAGGGCACGGGTGAGGAG
Seq A exon
CTGTTTGACCACATCGTGCAGTGCATCGCCGACTTCCTGGACTACATGGGCCTCAAGGGAGCCCAGCTGCCTTTGGGCTTCACGTTCTCATTTCCCTGCAGGCAGGCGAACATTGACAAG
Seq C2 exon
GGAACACTCATTGAGTGGACCAAAGGCTTCAAAGCTACTGACTGTGAAGGGGAAGATGTGGTGGATATGCTCAGGGAGGCCATCAAGAGGAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033398-'14-13,'14-11,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.4=100)
A:
PF0034916=Hexokinase_1=FE(19.0=100)
C2:
PF0034916=Hexokinase_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTTCCTCGCCCTGGATC
R:
TTCTCCTCTTGATGGCCTCCC
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]