DreEX6061149 @ danRer10
Exon Skipping
Gene
ENSDARG00000038703 | hkdc1
Description
hexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
Coordinates
chr13:22891965-22892659:-
Coord C1 exon
chr13:22892511-22892659
Coord A exon
chr13:22892203-22892322
Coord C2 exon
chr13:22891965-22892060
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTATTTCCGTTTAATTTCAGCTG
3' ss Score
8.15
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AAAGGGGAAAGTACCTTGCTTTGGATCTTGGTGGAACCAATTTCCGCGTGTTGGTGGTTAAGATTCGGACTGGCATGCGAAATTCAGTCCGGATGTACAACAAAATTTATGCCATCCCACTGGAGATTATGCAGGGCACAGGAGAGGAG
Seq A exon
CTGTTTGACCACATCGTTCAGTGTATCTCAGATTTCTTGGACTATATGGGAATGAAGAACACTCGTCTGCCACTTGGCTTCACCTTCTCTTTCCCGTGCAATCAGACAGGTATTGATAAG
Seq C2 exon
GGAGATCTGGTCTGCTGGACAAAGGGCTTCAAAGCGACAGACTGTGAAGGGTATGATGTTGTGGACATGCTGAGAGAGGCCATCAAAAGACGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038703-'12-12,'12-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGAAAGTACCTTGCTTTGG
R:
TTTCGTCTTTTGATGGCCTCTCT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]