GgaEX1028777 @ galGal3
Exon Skipping
Gene
ENSGALG00000021039 | E1BRU7_CHICK
Description
NA
Coordinates
chr6:11960268-11961962:+
Coord C1 exon
chr6:11960268-11960416
Coord A exon
chr6:11960506-11960625
Coord C2 exon
chr6:11961867-11961962
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTCTGCCCTTCCAGCTC
3' ss Score
10.2
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AGAAGGGAAAATACCTTGCCCTTGATCTTGGTGGGACAAATTTCAGGGTTCTGCTTGTCAAAATTAGAAGTGGAAGAAGGAGATCAGTACGAATGTATAACAAAATATTTGCCATTCCTTTGGAGATCATGCAAGGGACAGGGGAAGAG
Seq A exon
CTCTTTGACCATATAGTCCAGTGCATAGCAGACTTCTTGGAGTATATGGGGATTAAAGGTGCCCGCCTACCTCTGGGTTTCACCTTCTCCTTCCCGTGCAGGCAAGCCAGCATCGACAAG
Seq C2 exon
GGAACGCTTGTGGGATGGACAAAAGGGTTCAAGGCAACTGATTGTGAAGGGGAAGATGTTGTTGATATGCTGAGGGAGGCCATCAGGAGAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021039-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAAAATACCTTGCCCTTGA
R:
TTTCTTCTCCTGATGGCCTCC
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]