BtaEX6105383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25906435-25908214:+
Coord C1 exon
chr28:25906435-25906739
Coord A exon
chr28:25907640-25907788
Coord C2 exon
chr28:25908095-25908214
Length
149 bp
Sequences
Splice sites
3' ss Seq
AATGTTCTTGACTACAACAGAGA
3' ss Score
4.18
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTATTCTCGGCGTTTCCACAAGACTCTGCGGCGCTTGGTACCCGACTGTGATGTGCGTTTCCTCCTCTCCGAGAGCGGCAGTGGCAAGGGGGCCGCCATGGTGACTGCCGTGGCCTACCGCCTGGCTGAGCAGCACCGGCAGATAGAGGAGACCCTGGCCCACTTCAGCCTCACCAAGGAAATGCTGCTGGAGGTGAAAAAGCGGATGCGGGCTGAGATGGAATTGGGGCTGGGCAAGCAGACGCATGACAAGGCTGTGGTCAAGATGTTGCCCTCCTTCGTCCGGAGCACTCCTGATGGGACTG
Seq A exon
AGAACGGTGACTTCTTGGCCCTGGATCTTGGAGGAACGAATTTCCGCGTCCTGCTGGTGAAAATCCGTAGTGGGAAAAAGAGATCGGTGGAAATGCACAATAAGATCTACGCCATTCCCATTGAAATCATGCAGGGCACTGGGGAGGAG
Seq C2 exon
CTGTTTGACCACATCGTTTCCTGCATCTCTGACTTCCTGGACTACATGGGCATCAAGGGCCCTAAAATGCCTCTGGGCTTCACATTTTCGTTTCCCTGCAAGCAGACGAGCTTAGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380-'20-12,'20-11,21-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
A:
PF0034916=Hexokinase_1=FE(23.8=100)
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAAGGAAATGCTGCTGG
R:
GTCTGCTTGCAGGGAAACGAA
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]