GgaEX1028751 @ galGal3
Exon Skipping
Gene
ENSGALG00000004222 | F1NEI1_CHICK
Description
NA
Coordinates
chr6:11996931-11997860:+
Coord C1 exon
chr6:11996931-11997235
Coord A exon
chr6:11997486-11997634
Coord C2 exon
chr6:11997741-11997860
Length
149 bp
Sequences
Splice sites
3' ss Seq
ACACACGTATTCTTTTACAGAGA
3' ss Score
8.43
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GTACGCTCGGCGCTTGCACAAAACCACCCGGCGCCTGGTGCCTGACTCGGATGTGCGGTTCCTGCTGTCGGAGAGCGGCAGTGGGAAAGGGGCGGCGATGGTGACGGCGGTGGCATACCGGCTGTCGGAGCAGCACCGGCTCATCGACGAGACGCTGGCTGAGTTCAAGCTGACCCACGAGCAGCTGCTGCAGGTGAAGAAGAGGATGAGGACAGAGATGGAAGCAGGCCTGAAGAAGAAGAGTCACGAGACTGCCAAAGTGAAAATGCTGCCCACCTTTGTCCGCAGCACGCCGGATGGCACAG
Seq A exon
AGAACGGAGACTTTCTGGCGCTTGACCTTGGAGGGACAAACTTCAGAGTGTTGCTGGTGAAAATTCGCAGTGGTAAAAGGAGAACGGTTGAAATGCACAACAAGATCTATGCAATTCCTATAGAGGTGATGCAGGGAACGGGAGAAGAG
Seq C2 exon
CTGTTTGACCACATCGTTACCTGCATTTCGGACTTCCTGGATTATATGGGAATAAAAGGTGCACGGCTTCCTCTTGGCTTCACATTCTCCTTCCCTTGCAAGCAGACCAGTCTGGACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.126 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
A:
PF0034916=Hexokinase_1=FE(23.8=100)
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCAAGCTGACCCACGAG
R:
GTCTGCTTGCAAGGGAAGGAG
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]