MmuEX6048716 @ mm9
Exon Skipping
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:61747027-61749400:-
Coord C1 exon
chr10:61749096-61749400
Coord A exon
chr10:61747449-61747597
Coord C2 exon
chr10:61747027-61747146
Length
149 bp
Sequences
Splice sites
3' ss Seq
TGTGTTCTTCCCGGTGACAGAGC
3' ss Score
6.66
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTATTCCCGGCGGTTCCACAAGACCCTGAGGCGCCTGGTGCCTGACTCGGACGTCCGGTTCCTCCTCTCGGAGAGTGGCAGTGGCAAGGGAGCCGCCATGGTGACCGCTGTGGCCTACCGCCTGGCCGAGCAGCACCGGCAGATTGAGGAAACCCTGTCCCACTTCCGCCTCAGCAAGCAGGCACTGATGGAGGTGAAGAAGAAGCTGCGGTCAGAGATGGAAATGGGGCTGAGAAAGGAGACCAACAGCAGAGCTACGGTCAAAATGCTGCCTTCTTATGTTCGGAGCATCCCAGATGGGACTG
Seq A exon
AGCATGGTGACTTCCTGGCCTTGGATCTCGGAGGAACGAATTTCCGAGTCCTACTGGTAAAGATCCGTAGTGGGAAAAAGAGAACAGTGGAGATGCACAACAAGATCTACTCCATTCCCCTGGAAATCATGCAGGGCACCGGGGATGAG
Seq C2 exon
CTGTTTGATCACATTGTCTCCTGCATCTCCGACTTCCTGGACTACATGGGGATCAAAGGCCCCCGGATGCCTCTGGGCTTCACCTTCTCGTTTCCCTGCAAGCAGACGAGCCTAGATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012-'30-31,'30-30,31-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=PD(31.2=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
A:
PF0034916=Hexokinase_1=FE(23.8=100)
C2:
PF0034916=Hexokinase_1=FE(18.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAAACCCTGTCCCACTT
R:
GGAAACGAGAAGGTGAAGCCC
Band lengths:
256-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: