BtaEX6105384 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25903445-25907788:+
Coord C1 exon
chr28:25903445-25903678
Coord A exon
chr28:25906435-25906739
Coord C2 exon
chr28:25907640-25907788
Length
305 bp
Sequences
Splice sites
3' ss Seq
CTGTGCACCCCTCCCCCCAGGTA
3' ss Score
10.69
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GAATAAGGAAGGCCTCCACAATGCCAAAGAAATCCTGACCCGCCTGGGAGTGGAGCCGTCTGATGACGACTGTGTTGCGGTTCAGCATGTGTGCACCATCGTCTCATTTCGCTCTGCCAACCTGGTGGCGGCGACCCTGGGTGCCATCTTGAGCCGCCTTCGAGATAACAAGGGCACGCCCAGGCTGCGGACCACGGTTGGTGTCGACGGGTCCCTTTACAAGACGCACCCACA
Seq A exon
GTATTCTCGGCGTTTCCACAAGACTCTGCGGCGCTTGGTACCCGACTGTGATGTGCGTTTCCTCCTCTCCGAGAGCGGCAGTGGCAAGGGGGCCGCCATGGTGACTGCCGTGGCCTACCGCCTGGCTGAGCAGCACCGGCAGATAGAGGAGACCCTGGCCCACTTCAGCCTCACCAAGGAAATGCTGCTGGAGGTGAAAAAGCGGATGCGGGCTGAGATGGAATTGGGGCTGGGCAAGCAGACGCATGACAAGGCTGTGGTCAAGATGTTGCCCTCCTTCGTCCGGAGCACTCCTGATGGGACTG
Seq C2 exon
AGAACGGTGACTTCTTGGCCCTGGATCTTGGAGGAACGAATTTCCGCGTCCTGCTGGTGAAAATCCGTAGTGGGAAAAAGAGATCGGTGGAAATGCACAATAAGATCTACGCCATTCCCATTGAAATCATGCAGGGCACTGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380-'18-11,'18-9,20-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAAGAAATCCTGACCCG
R:
CCAGTGCCCTGCATGATTTCA
Band lengths:
355-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]