GgaEX1028750 @ galGal3
Exon Skipping
Gene
ENSGALG00000004222 | F1NEI1_CHICK
Description
NA
Coordinates
chr6:11996142-11997634:+
Coord C1 exon
chr6:11996142-11996375
Coord A exon
chr6:11996931-11997235
Coord C2 exon
chr6:11997486-11997634
Length
305 bp
Sequences
Splice sites
3' ss Seq
CTTGCAGCCTCTCCCCGCAGGTA
3' ss Score
10.38
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GAGCAAAGAAGGTTTGAACAAAGCCAAAGAAATCTTAACCCGCCTGGGGGTGGAGCCGTCCCACGAGGACTGCATCGCAGTCCAGCACGTCTGCACCATCGTGTCCTTCCGCTCGGCCAACCTGGTGGCCTCCACGCTGGGTGCCATCCTCAACCAGCTGCGGGATAACAAAGGGGTTGGCCGCCTCCGCACCACCGTGGGTGTCGATGGCTCCCTCTACAAGATGCATCCACA
Seq A exon
GTACGCTCGGCGCTTGCACAAAACCACCCGGCGCCTGGTGCCTGACTCGGATGTGCGGTTCCTGCTGTCGGAGAGCGGCAGTGGGAAAGGGGCGGCGATGGTGACGGCGGTGGCATACCGGCTGTCGGAGCAGCACCGGCTCATCGACGAGACGCTGGCTGAGTTCAAGCTGACCCACGAGCAGCTGCTGCAGGTGAAGAAGAGGATGAGGACAGAGATGGAAGCAGGCCTGAAGAAGAAGAGTCACGAGACTGCCAAAGTGAAAATGCTGCCCACCTTTGTCCGCAGCACGCCGGATGGCACAG
Seq C2 exon
AGAACGGAGACTTTCTGGCGCTTGACCTTGGAGGGACAAACTTCAGAGTGTTGCTGGTGAAAATTCGCAGTGGTAAAAGGAGAACGGTTGAAATGCACAACAAGATCTATGCAATTCCTATAGAGGTGATGCAGGGAACGGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222-'12-16,'12-15,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.126 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAAGAAATCTTAACCCGCC
R:
CCGTTCCCTGCATCACCTCTA
Band lengths:
353-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]