DreEX0037678 @ danRer10
Exon Skipping
Gene
ENSDARG00000039452 | hk1
Description
hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
Coordinates
chr13:22848715-22852851:-
Coord C1 exon
chr13:22852618-22852851
Coord A exon
chr13:22849797-22850101
Coord C2 exon
chr13:22848715-22848863
Length
305 bp
Sequences
Splice sites
3' ss Seq
ACTGAATCTGTTTTTGCCAGGTA
3' ss Score
6.56
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGCAAGGAAGGACTAACCAAAGCCAAGGAGATTTTGACACGCTTGGGTGTAGAGCCGTCTGAGGACGACTGCATTGCTGTGCAGCATGTTTGTGCCATTGTCTCTTTTCGCTCTGCTAATCTAATTGCTGCCACTTTGGGTGCAATCCTGACACGTCTGAAGGACAACAAGAACACCCCACGTCTCCGCACTACTGTGGGCATTGATGGCTCCCTATACAAGATGCACCCACA
Seq A exon
GTATGCCCGTCGGTTGCACAAAACAGTGCGTCGTCTGGTGCCAGAGTCTGATGTTCGCTTCTTGCTGTCTGAGAGTGGAAGTGGAAAGGGAGCTGCACTGGTGACAGCCTGGGCTTACCGTTTGGCGGACCAGGAGCGTCAAATTGCAGAAACCCTGGAAGAGTTCAGGTTGACCAAAGACCAGCTGCTAGAGGTGAAAAAGAGGATGAGAACTGAGATTCAGAATGGACTGAGCAAGAGCACCCAAAACACAGCCACCGTCAAAATGCTGCCCACATATGTGCGGAGTACCCCTGATGGATCAG
Seq C2 exon
AAAACGGTGACTTTTTGGCTCTGGATCTTGGAGGTACAAACTTCAGGGTCCTTTTGGTAAAGATTCGCAGTGGCAAGAGACGAACTGTGGAGATGCATAATAAAATTTATGCCATTCCCATAGAAGTAATGCAAGGAACCGGAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039452-'10-14,'10-13,11-14
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.146 C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
PF0372711=Hexokinase_2=PD(16.7=38.8),PF0034916=Hexokinase_1=PU(29.1=58.3)
C2:
PF0034916=Hexokinase_1=FE(23.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACACGCTTGGGTGTAGAG
R:
TCCTCTCCGGTTCCTTGCATT
Band lengths:
348-653
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]