BtaEX6106629 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003572 | F11
Description
Bos taurus coagulation factor XI (F11), mRNA. [Source:RefSeq mRNA;Acc:NM_001008665]
Coordinates
chr27:15352135-15356227:+
Coord C1 exon
chr27:15352135-15352190
Coord A exon
chr27:15354679-15354841
Coord C2 exon
chr27:15356121-15356227
Length
163 bp
Sequences
Splice sites
3' ss Seq
CGTCATGTATTACAACCTAGAGT
3' ss Score
3.21
5' ss Seq
GTGGTAAAT
5' ss Score
5.18
Exon sequences
Seq C1 exon
GATGACTTTATTATATCAAATGGTACATTTCGCTTTATTTGCCTCCGTTGCTGGTG
Seq A exon
AGTGTGTGACCACGCTGTTCCAAGATGCCTGCTTTAAAGGAGGAGACATCACTGTGGCTTTCGCGCCAAATGCCAAGCACTGCCAAATCATCTGCACCCACCACCCAAGGTGCTTGCTCTTCACTTTTATGACTGAATCATCATCAGAAGATCCTACCAAGTG
Seq C2 exon
GTATACTTGCATCCTGAAAGACAGTGTTACAGAAACACTGCCAATGGTGAATATGACAGGAGCAATTTCTGGATATTCTTCCAAGCAATGCTTGCACCACATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003572-'1-3,'1-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002421=PAN_1=PU(63.1=96.4)
C2:
PF0002421=PAN_1=PD(35.7=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTCGCTTTATTTGCCTCCGT
R:
CACTTATGTGGTGCAAGCATTG
Band lengths:
138-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]