RnoEX6055614 @ rn6
Exon Skipping
Gene
ENSRNOG00000013684 | F11
Description
coagulation factor XI [Source:RGD Symbol;Acc:1309364]
Coordinates
chr16:50182296-50191330:+
Coord C1 exon
chr16:50182296-50182351
Coord A exon
chr16:50189569-50189731
Coord C2 exon
chr16:50191224-50191330
Length
163 bp
Sequences
Splice sites
3' ss Seq
CCCACCTTTCTTCTTTGCAGAAT
3' ss Score
11.39
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GATGACCTCATTACAGCAGGTGTTATATTTTATCTTTTTTGCCTCCGTTTCTAGTG
Seq A exon
AATGTATCACTAAGGTCTTCAAAGACATCAGCTTTCAAGGAGGTGACCTAAGTACTGTTTTCACACCGAGTGCCACGTACTGCCAGCTGGTCTGCACACACCACCCACGTTGCTTGCTCTTCACGTTCATGGCTGAGTCATCTTCTGACGATCCCACCAAATG
Seq C2 exon
GTTTGCCTGCATCCTGAAGGACAGTCTCACAGAAACATTGCCGATGGTACACATGACAGGAGCGGTTTCTGGATATTCCTTCAAGCAATGCCCTCAGCAATTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013684-'2-8,'2-5,4-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002421=PAN_1=PU(63.1=96.4)
C2:
PF0002421=PAN_1=PD(35.7=81.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGACCTCATTACAGCAGGTGT
R:
GCTGAGGGCATTGCTTGAAGG
Band lengths:
154-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]