GgaEX0020209 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr4:60984829-60987672:+
Coord C1 exon
chr4:60984829-60984887
Coord A exon
chr4:60986783-60986945
Coord C2 exon
chr4:60987566-60987672
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTATTTCATATCAGAAT
3' ss Score
6.12
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GATGATTTGGATTTATCAGACTTTTTATTTCATTTTCTTATTTGCTTCAGTTTACAGCG
Seq A exon
AATGTGTGACGCAGATCTATGAAAATACTTACTTTCAAGGAGGAGACCTCACTACGGTTTTCACACCAAGTGCCAATTACTGTCAAATAGTTTGTACTTACCATCCTACCTGCCTGTTCTTCACATATTTGCCAGTGACATGGACTAAAGATCCTGCACAGAG
Seq C2 exon
GTTCTCCTGCTACTTAAAAGACAGTGATACTGAAATGCTACCAAAAGTGAAGATGGAAGGAGCTTTTTCTGGACATTCTTTAAAACAATGCAACATCAAAATTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013571_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0002421=PAN_1=PU(63.1=96.4)
C2:
PF0002421=PAN_1=PD(35.7=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTATTTGCTTCAGTTTACAGCG
R:
TGATGTTGCATTGTTTTAAAGAATGT
Band lengths:
122-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]