RnoEX6055606 @ rn6
Exon Skipping
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50152738-50160802:+
Coord C1 exon
chr16:50152738-50152796
Coord A exon
chr16:50158534-50158696
Coord C2 exon
chr16:50160696-50160802
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATCAACTTTTATATCACAGGGT
3' ss Score
6.12
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGATTTTATTCAAACAAGTGGGTTATTTTGTTTCCTTGTTCGCTACAGTTTCCTGTG
Seq A exon
GGTGTCTGTCACAACTGTATGCAAATACCTTCTTCAGAGGTGGGGATCTGGCTGCCATCTACACCCCGGATGCCCAGCACTGTCAGAAGATGTGCACGTTTCACCCCAGGTGCCTGCTCTTCAGCTTCCTTGCCGTGAGTCCAACCAAGGAGACAGATAAAAG
Seq C2 exon
GTTTGGGTGCTTCATGAAAGAGAGCATTACAGGGACTTTGCCAAGAATACACCGGACAGGGGCCATTTCTGGTCATTCTTTAAAACAGTGTGGCCATCAATTAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118-'1-4,'1-1,2-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(1.2=5.0)
A:
PF0002421=PAN_1=PD(96.2=90.9)
C2:
PF0002421=PAN_1=PD(34.9=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATTTTATTCAAACAAGTGGGTT
R:
CACTTAATTGATGGCCACACTGT
Band lengths:
166-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]