BtaEX6106617 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009501 | KLKB1
Description
Bos taurus kallikrein B, plasma (Fletcher factor) 1 (KLKB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046352]
Coordinates
chr27:15326714-15330907:+
Coord C1 exon
chr27:15326714-15326772
Coord A exon
chr27:15328741-15328903
Coord C2 exon
chr27:15330801-15330907
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTTCAATGATTCTGTCATAGGAT
3' ss Score
7.5
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GATGATTGCACTCAGGCAAGCAGCTTACTTCATTTGCCTGTTTGCTACAGTTTCCTGTG
Seq A exon
GATGCTTGACTCAACTATATCACAACATCTTCTTCAGAGGTGGGGATGTATCAGCCATGTACACCCCAGATGCCCAATACTGTCAGCTGATGTGCACCTTCCACCCTAGGTGCTTGCTCTTTAGTTTTCTTCCTGAAAATTCAACCAGTGATGCAGACAAAAG
Seq C2 exon
GTTTGGTTGCTTCTTGAAGGACAGTGTTACAGGAACCCTGCCGAGAGTGTCACGGACAGGTGCAATTTCGGGACATTCTTTAAAGCGATGTGGTCATCAAATTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009501-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(1.2=5.0)
A:
PF0002421=PAN_1=FE(62.8=100)
C2:
PF0002421=PAN_1=PD(34.9=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTGCACTCAGGCAAGCA
R:
TGACCACATCGCTTTAAAGAATGT
Band lengths:
154-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]