MmuEX6035498 @ mm9
Exon Skipping
Gene
ENSMUSG00000031640 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:46372280-46379486:-
Coord C1 exon
chr8:46379428-46379486
Coord A exon
chr8:46374374-46374536
Coord C2 exon
chr8:46372280-46372386
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATCAACTTTTAAATCACAGGGT
3' ss Score
4.98
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GATGATTTTATTCAACCGAGTGGGTTATTTTGTTTCCTTGTTTGCTACCGTCTCCTGTG
Seq A exon
GGTGTATGACTCAACTGTATAAAAATACCTTCTTCAGAGGTGGGGATCTAGCTGCCATCTACACCCCAGATGCCCAGTACTGTCAGAAGATGTGCACTTTTCACCCCAGGTGCCTGCTGTTCAGCTTTCTCGCCGTGACTCCACCCAAAGAGACAAATAAACG
Seq C2 exon
GTTTGGTTGCTTCATGAAAGAGAGCATTACAGGGACTTTGCCAAGAATACACCGGACAGGGGCCATTTCTGGTCATTCTTTAAAGCAGTGTGGCCATCAAATAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031640-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(1.2=5.0)
A:
PF0002421=PAN_1=FE(62.8=100)
C2:
PF0002421=PAN_1=PD(34.9=81.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATTTTATTCAACCGAGTGGG
R:
ACTTATTTGATGGCCACACTGCT
Band lengths:
165-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: