BtaEX6107183 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027629 | ANK1
Description
ANK1 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:A2VE25]
Coordinates
chr27:36262622-36264137:-
Coord C1 exon
chr27:36264054-36264137
Coord A exon
chr27:36263073-36263138
Coord C2 exon
chr27:36262622-36262755
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTCTCACTTTTCCAGATC
3' ss Score
12.43
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GGGAATGAGCTTCAGAATATTCCAGGGGAGCAGGTGACAGAGGAGCATTTCACAGATGAGCAGGGCAACGTCATCACCAAGAAG
Seq A exon
ATCGTTCGCAAAGTCGTTCGCCAGATAGACCCGTCCGGAGCCGATGACACCCAGGAGCTTGAGGAG
Seq C2 exon
GTGGAGCTGAGAGGAAGTGGCCTGCAGCCGGACCTGATAGAGGGCAGGAAGGGGGCTCAGATAGTGAAGCGGGCCAGCCTCAAAAGGGGGAAGCAGTGATCTCCAGCCCCTCTTGTGGAATGGCCTCTTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027629-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.409 C2=0.281
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCAGGGGAGCAGGTGAC
R:
AAGAGGGGCTGGAGATCACTG
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]