GgaEX0004703 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2663951-2665578:-
Coord C1 exon
chr22:2665453-2665578
Coord A exon
chr22:2665003-2665164
Coord C2 exon
chr22:2663951-2664051
Length
162 bp
Sequences
Splice sites
3' ss Seq
GGCTGCGTGGGTCTCCACAGGTC
3' ss Score
8.64
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCTCTGCTGCCCCCTGAAATGCTTTTCCTCCTGTCCCTCCAGGGCAACGAAGTCCTCCATCTCCCTGGGGAGCATGTGACTGAGGAGCAGTTCACAGATGAACAAGGCAATATAATCACCAAGAAG
Seq A exon
GTCATCCGGAAAGTGGTGCATCAGTTGGACCTCGACACGGATGACAGGAAGGAGCATGAGGACTTGATTCTGGAGGGCTCCCTGCAGGAGCCCCAAGACCTGGAGGCAGAGGCTGATCACTTCATGTACTCCATCCTACAGCGGGACGGTCTGGGGGCCAAG
Seq C2 exon
GATCTCACCTCAACACCAAACCACTGATCTCCACACCAACCTGAGAAGAGAGGAGAGGAAAACAGAGATTGGAGGGAAGCAGGGCTGGCTGTACATGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'49-49,'49-47,50-49
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.677 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCTGCCCCCTGAAATG
R:
GAAACATGTACAGCCAGCCCT
Band lengths:
226-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]