GgaEX0004703 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2611579-2615354:-
Coord C1 exon
chr22:2615184-2615354
Coord A exon
chr22:2614734-2614895
Coord C2 exon
chr22:2611579-2613782
Length
162 bp
Sequences
Splice sites
3' ss Seq
GGCTGCGTGGGTCTCCACAGGTC
3' ss Score
8.64
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCTGGGGCTGTGCGGGAGCCGGAGCCTTGGGCTGCGTGCTGGAAGGCTCTGCTGCCCCCTGAAATGCTTTTCCTCCTGTCCCTCCAGGGCAACGAAGTCCTCCATCTCCCTGGGGAGCATGTGACTGAGGAGCAGTTCACAGATGAACAAGGCAATATAATCACCAAGAAG
Seq A exon
GTCATCCGGAAAGTGGTGCATCAGTTGGACCTCGACACGGATGACAGGAAGGAGCATGAGGACTTGATTCTGGAGGGCTCCCTGCAGGAGCCCCAAGACCTGGAGGCAGAGGCTGATCACTTCATGTACTCCATCCTACAGCGGGACGGTCTGGGGGCCAAG
Seq C2 exon
GATCTCACCTCAACACCAAACCACTGATCTCCACACCAACCTGAGAAGAGAGGAGAGGAAAACAGAGATTGGAGGGAAGCAGGGCTGGCTGTACATGTTTCAATAGGCTAATGGCATGATTTCTGTACGAGATACTTACCGTCCTATCCGCATGACTGACTGACTGCAAGACGCATGAGCTACAGTACTTCCAGCAGACAGAGGGACCCTGTCCCTGCCTTGCTGCCATCAGGAGCCTAAAGACAGCAGCACGCACAAGGGGTATCCTTCGGCTCCTCTGGGAGGCCAGAGCTGGACTGACAGCAAATGAGAGGGGAGAAGAATCCGCCCTCGCACGTCCACCTGTGTCACTACATCCCTGTGCAGTGCTCCAGTGGCAGGAAGGAGGCTGGGGCTGCTCACTGAAGGAGAAGAGGGGCTCTATCCCCATCACCATTCTTGCCTCTGCTGGACTTGCTTCTCATCCCTCAGTGAGTGCTGGGGCAGGGGGAGGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX1-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.241 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGTCCTCCATCTCCCTG
R:
TTGCAGTCAGTCAGTCATGCG
Band lengths:
249-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]