RnoEX0009329 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73681422-73682880:-
Coord C1 exon
chr16:73682797-73682880
Coord A exon
chr16:73681809-73681874
Coord C2 exon
chr16:73681422-73681520
Length
66 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTTTTTCCAGATC
3' ss Score
13.75
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
GGGGATGAGCTTCAGAATATTCCAGGAGAGCAGGTGACAGAGGAACAATTCACAGACGAACAGGGCAACATTGTCACCAAGAAG
Seq A exon
ATCATTCGAAAAGTCGTCCGACAGGTGGACTCCTCTGGTGCCATCGACACCCAGCAGCACGAGGAG
Seq C2 exon
GTGGAGCTAAGAGGGAGTGGACTCCAGCCGGACCTGATAGAAGGCAGGAAGGGGGCTCAAATAGTGAAGCGGGCCAGCTTGAAAAGGGGCAAACAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'70-65,'70-64,72-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=0.561 C2=0.656
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAATATTCCAGGAGAGCAGGT
R:
GTTTGCCCCTTTTCAAGCTGG
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]