BtaEX6107203 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001244 | PLAT
Description
Bos taurus plasminogen activator, tissue (PLAT), mRNA. [Source:RefSeq mRNA;Acc:NM_174146]
Coordinates
chr27:36747091-36749166:-
Coord C1 exon
chr27:36749124-36749166
Coord A exon
chr27:36747441-36747578
Coord C2 exon
chr27:36747091-36747201
Length
138 bp
Sequences
Splice sites
3' ss Seq
CGGCCTGTCTGTCGTTACAGTGA
3' ss Score
7.89
5' ss Seq
GAAGTGCGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GAAACCTACAGACGACTCAGGAGAGGCGCCAGATCGTACAAAG
Seq A exon
TGACCTGCAGAGATGGAAAAACGCAGATGACGTACCGCCAACACGACTCCTGGCTGCGACCCCTGCTCAGGGGCAACCAAGTGGAGCACTGCTGGTGCGACGGCGGCCGGGCCCAGTGCCACTCGGTGCCCGTCAGAA
Seq C2 exon
GTTGCAGTGAACCTTGGTGTTTCAATGGGGGGACATGTCGGCAGGCCCTCTATTCTTCAGACTTTGTCTGCCAGTGCCCAGAAGGGTTCATGGGGAAGCTCTGTGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001244-'8-3,'8-2,9-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0003913=fn1=WD(100=80.9)
C2:
PF0000822=EGF=WD(100=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCTACAGACGACTCAGGA
R:
CTATTTCACAGAGCTTCCCCATGA
Band lengths:
154-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]