MmuEX6034861 @ mm9
Exon Skipping
Gene
ENSMUSG00000031538 | Plat
Description
plasminogen activator, tissue [Source:MGI Symbol;Acc:MGI:97610]
Coordinates
chr8:23878918-23882788:+
Coord C1 exon
chr8:23878918-23878960
Coord A exon
chr8:23882166-23882303
Coord C2 exon
chr8:23882678-23882788
Length
138 bp
Sequences
Splice sites
3' ss Seq
AAACCTGCTTTGCCTTGCAGCGA
3' ss Score
8.99
5' ss Seq
GAAGTACGT
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGAATACATGGGAGGTTCAGAAGAGGAGCCCGGTCCTACAGAG
Seq A exon
CGACCTGCAGAGATGAGCCAACGCAGACAACTTACCAACAGCACCAGTCGTGGCTCCGACCCATGCTCAGAAGCAGCCGGGTGGAATATTGCCGGTGCAACAGCGGCCTGGTACAATGCCACTCAGTGCCTGTCCGAA
Seq C2 exon
GTTGCAGCGAACCAAGATGCTTCAATGGGGGGACGTGTCAGCAGGCCCTGTATTTCTCTGACTTTGTCTGCCAGTGCCCTGATGGATTTGTAGGGAAACGCTGTGACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031538-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0003913=fn1=WD(100=80.9)
C2:
PF0000822=EGF=WD(100=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATACATGGGAGGTTCAGAAGA
R:
CTATGTCACAGCGTTTCCCTACA
Band lengths:
154-292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: