DreEX0055995 @ danRer10
Exon Skipping
Gene
ENSDARG00000062707 | plat
Description
plasminogen activator, tissue [Source:ZFIN;Acc:ZDB-GENE-081104-181]
Coordinates
chr8:2225065-2230721:-
Coord C1 exon
chr8:2230679-2230721
Coord A exon
chr8:2230173-2230307
Coord C2 exon
chr8:2225065-2225175
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTGTCTGTGTGTCAGAAG
3' ss Score
7.36
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
GAGCTGCATGACAGACAAAAAAGAGGAACTCGCAATTATAGAG
Seq A exon
AAGCGTGTGTAGACTCTAATTCGGCCGCGGTCAGAGACATTGGTGTGACGTGGCTGCGATGGAAAGGACTGAAAGTCGAGTTCTGCCGCTGTGCGTTAAGAGGAAGAGCTCGCTGTCATGAGGTCCCTGTGACTA
Seq C2 exon
AATGCTTCGTGTCTAAGTGTTATAATGGAGGGACGTGTAAAGAAGCGCTTTACTCCAGTGACTTCATCTGCCAGTGTCCGCCCGGCTTTACAGGCACACAGTGTGAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062707-'3-5,'3-3,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=86.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]