BtaEX6108383 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002178 | PPL
Description
periplakin [Source:HGNC Symbol;Acc:HGNC:9273]
Coordinates
chr25:3975151-3976908:-
Coord C1 exon
chr25:3976805-3976908
Coord A exon
chr25:3976477-3976637
Coord C2 exon
chr25:3975151-3975329
Length
161 bp
Sequences
Splice sites
3' ss Seq
TGACTCTGACCTCCCTCCAGCAG
3' ss Score
7.39
5' ss Seq
AAGGTACCC
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCACAGCCTGGGCAGCCAGTACCAGAGCCTGCGGCAGAAGGCAGCTGGGAGCAGAAAGGCGCTCCAGGAGCAGCATGAGGTGCTGAAGGCAGAGAGCTCTGGAG
Seq A exon
CAGATGCCTCGGACCTGCAGGGCCGCCAGCTGCTGGCCGGCTTGGACAAGGTGGCCAGCGACCTGGACCGGCAGGAGAAGGCCATCACGGCCATCCTGCGGCCGCCGCTGGAGCAGGGCCGGGCTGTGCAGGACAGCGCCGAGAGGGCCAAGGACCTCAAG
Seq C2 exon
AACATCACCAACGAGCTGCTGCGGATCGAGCCCGAGAAGGCGCGCAGCACGGCCGAGGGCGAGGCGTTCGTGCGGGCCCTCCCGGACAGCGGCAGCACCGCCCTGCTGAGGACGCGGGTGGAGGACACCCAGCGCAGATACGAGCGCCTGGTGCAGCTGCTGGAAGCCGCCCAGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002178-'18-19,'18-17,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.426 C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAGCCAGTACCAGAG
R:
CACCAGGCGCTCGTATCTG
Band lengths:
250-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]